<?xml version="1.0" encoding="ISO-8859-1" ?>
    <rss version="2.0">
    <channel>
    <title>Hydrogen@Home</title>
    <link>http://hydrogenathome.org/</link>
    <description>BOINC project Hydrogen@Home: Main page News</description>
    <copyright>Jack Shultz</copyright>
    <lastBuildDate>Mon, 28 Apr 2008 14:44:52 GMT</lastBuildDate>
    <language>en-us</language>
    <image>
        <url>http://hydrogenathome.org/rss_image.gif</url>
        <title>Hydrogen@Home</title>
        <link>http://hydrogenathome.org/</link>
    </image>
<item>
            <title>Project News April 28, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#89</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#89</guid>
            <description><![CDATA[Many thanks to Claude and [B^S] sTrey for the Mac Intel platform which works on multiple versions of OS X. I continue to trouble shoot AutoDock issues. It looks like I have resolved the issues related to atomic parameters. Still, there are some troublesome molecules that our scripts have trouble processing. I am carefully studying these and communicating with Scripps.
-Jack]]></description>
            <pubDate>Mon, 28 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 27, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#88</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#88</guid>
            <description><![CDATA[We got a new Mac Intel platform and I would love a little testing from some folks out there. You should be able to generate workunits for your host on our workunit generator by using the listed examples.
-Jack]]></description>
            <pubDate>Sun, 27 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 24, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#87</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#87</guid>
            <description><![CDATA[Interested in Fuel Cell Vehicles? Would you like to test drive one? Check out Project Driveway  http://driveway.gongos.com/
-Jack]]></description>
            <pubDate>Thu, 24 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 23, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#86</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#86</guid>
            <description><![CDATA[I need someone runing OS X 10.4 (intel) to test an application. Please PM [B^S] sTrey on our project for details.
-Jack]]></description>
            <pubDate>Wed, 23 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 23, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#85</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#85</guid>
            <description><![CDATA[Our current mac build is only compatible with system kernel 9.2.2 which is available on Mac OS 10.5 Leopard. We are working on a multi-OS mac intel port.
-Jack]]></description>
            <pubDate>Wed, 23 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 20, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#84</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#84</guid>
            <description><![CDATA[Just released a mac intel platform for autodock on our project. I would appreciate some feeback if someone could generate workunits.
-Jack]]></description>
            <pubDate>Sun, 20 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 13, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#83</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#83</guid>
            <description><![CDATA[I came across a software tool for force field calculations called JavaGenes. This Open source package developed by NASA is free to redistribute. I will see if these force fields are compatible with Amber and other molecular dynamics packages.
-Jack]]></description>
            <pubDate>Sun, 13 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 12, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#82</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#82</guid>
            <description><![CDATA[We identified a potential source of our chronic workunit problems. Certain protein files contain non-standard residues such as nucleic acids. One of the MGL Tools Developers suggested this command-line prepare_receptor4.py -U nphs_lps_waters etc. This should ignore these non-standards residues. We are running workunits specifically on the previously failed protein files.
-Jack]]></description>
            <pubDate>Sat, 12 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        <item>
            <title>Project News April 9, 2008</title>
            <link>http://hydrogenathome.org/all_news.php#81</link>
            <guid isPermaLink="true">http://hydrogenathome.org/all_news.php#81</guid>
            <description><![CDATA[Over the last few weeks I have studied molecular force field parameters which are required to run molecular dynamices. Force field parameters supplied by Amber, like the General Amber Force Field (GAFF) do not include parameters for molecules containing Iron. If I want to run a semi-empirical QM/MM Molecular Dynamics simulation on molecules interacting with Fe-Hydrogenase, I ought to have force field parameters for Iron. There are ways to computationally derive force fields or you can find them in a database. I'm not entirely sure how to derive them. I recently got in touch with a researcher involved with R.E.D.-III http://q4md-forcefieldtools.org/RED/ Their group agreed to give me an academic license so I could better explore charge derivations. Their group operates out of Universite de Picardie - Jules Verne. -Jack]]></description>
            <pubDate>Wed, 09 Apr 2008 00:00:00 GMT</pubDate>
            </item>
        
    </channel>
    </rss>
